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Bra004330 protein (Brassica rapa) - STRING interaction network
"Bra004330" - AT1G68670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004330AT1G68670 (E=1e-087) | myb family transcription factor (359 aa)    
Predicted Functional Partners:
Bra019359
AT4G22770 (E=1e-135) | DNA-binding family protein (329 aa)
           
  0.456
Bra002325
AT5G20710 (E=0.0) BGAL7 | BGAL7 (beta-galactosidase 7); beta-galactosidase (829 aa)
           
  0.455
Bra036606
AT5G27930 (E=3e-182) | protein phosphatase 2C, putative / PP2C, putative (373 aa)
           
  0.408
Bra020569
AT5G27930 (E=3e-183) | protein phosphatase 2C, putative / PP2C, putative (375 aa)
           
  0.408
Bra009875
AT5G26010 (E=3e-142) | catalytic/ protein serine/threonine phosphatase (338 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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