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Bra004333 protein (Brassica rapa) - STRING interaction network
"Bra004333" - AT1G68730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004333AT1G68730 (E=6e-053) | zinc finger (DNL type) family protein (367 aa)    
Predicted Functional Partners:
Bra028628
AT5G09590 (E=0.0) MTHSC70-2, HSC70-5 | MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding (680 aa)
       
 
  0.784
Bra028626
AT5G09590 (E=5e-025) MTHSC70-2, HSC70-5 | MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding (156 aa)
       
 
  0.784
Bra019231
AT4G24280 (E=0.0) cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (710 aa)
       
 
  0.784
Bra013788
AT4G24280 (E=2e-114) cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (534 aa)
       
 
  0.784
Bra013786
AT4G24280 (E=0.0) cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (711 aa)
       
 
  0.784
Bra011794
AT4G37910 (E=0.0) mtHsc70-1 | mtHsc70-1 (mitochondrial heat shock protein 70-1); ATP binding (682 aa)
       
 
  0.784
Bra010620
AT4G37910 (E=0.0) mtHsc70-1 | mtHsc70-1 (mitochondrial heat shock protein 70-1); ATP binding (676 aa)
       
 
  0.784
Bra010498
AT4G24280 (E=0.0) cpHsc70-1 | cpHsc70-1 (chloroplast heat shock protein 70-1); ATP binding (717 aa)
       
 
  0.784
Bra009392
AT4G32210 (E=2e-079) SDH3-2 | SDH3-2; succinate dehydrogenase (211 aa)
       
 
  0.784
Bra006027
AT5G09590 (E=0.0) MTHSC70-2, HSC70-5 | MTHSC70-2 (MITOCHONDRIAL HSP70 2); ATP binding (681 aa)
       
 
  0.784
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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