STRINGSTRING
Bra004335 protein (Brassica rapa) - STRING interaction network
"Bra004335" - AT1G68765 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004335AT1G68765 (E=2e-024) IDA | IDA (INFLORESCENCE DEFICIENT IN ABSCISSION); receptor binding (76 aa)    
Predicted Functional Partners:
Bra011033
AT4G28490 (E=0.0) RLK5, HAE | HAE (HAESA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (753 aa)
       
 
  0.958
Bra016112
AT1G71830 (E=2e-221) SERK1, ATSERK1 | SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1); kinase/ transmembrane receptor protein serine/threonine kinase (607 aa)
       
      0.633
Bra037825
AT5G65710 (E=0.0) HSL2 | HSL2 (HAESA-Like 2); ATP binding / kinase/ protein serine/threonine kinase (989 aa)
       
 
  0.630
Bra003911
AT1G71830 (E=4e-221) SERK1, ATSERK1 | SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1); kinase/ transmembrane receptor protein serine/threonine kinase (571 aa)
       
      0.617
Bra029030
AT5G54310 (E=4e-197) AGD5 | AGD5 (ARF-GAP domain 5); ARF GTPase activator/ DNA binding / zinc ion binding (478 aa)
           
  0.489
Bra022711
AT5G54310 (E=2e-175) AGD5 | AGD5 (ARF-GAP domain 5); ARF GTPase activator/ DNA binding / zinc ion binding (472 aa)
           
  0.477
Bra016938
AT2G41370 (E=6e-228) BOP2 | BOP2 (BLADE ON PETIOLE2); protein binding (487 aa)
           
  0.477
Bra002995
AT5G54310 (E=2e-187) AGD5 | AGD5 (ARF-GAP domain 5); ARF GTPase activator/ DNA binding / zinc ion binding (474 aa)
           
  0.477
Bra016912
AT2G41850 (E=2e-206) PGAZAT, ADPG2 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase (448 aa)
           
  0.471
Bra016911
AT2G41850 (E=3e-215) PGAZAT, ADPG2 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase (433 aa)
           
  0.471
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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