STRINGSTRING
Bra004337 protein (Brassica rapa) - STRING interaction network
"Bra004337" - AT1G68795 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004337AT1G68795 (E=9e-027) CLE12 | CLE12 (CLAVATA3/ESR-RELATED 12); protein binding / receptor binding (112 aa)    
Predicted Functional Partners:
Bra033047
AT3G28455 (E=2e-017) CLE25 | CLE25 (CLAVATA3/ESR-RELATED 25); protein binding / receptor binding (103 aa)
           
  0.531
Bra007891
AT1G69970 (E=3e-036) CLE26 | CLE26 (CLAVATA3/ESR-RELATED 26); protein binding / receptor binding (104 aa)
           
  0.505
Bra016015
AT1G73165 (E=2e-028) CLE1 | CLE1 (CLAVATA3/ESR-RELATED 1); protein binding / receptor binding (73 aa)
           
  0.499
Bra027811
AT1G63245 (E=5e-015) CLE14 | CLE14 (CLAVATA3/ESR-RELATED 14); protein binding / receptor binding (84 aa)
     
   
  0.492
Bra027629
AT1G63245 (E=6e-022) CLE14 | CLE14 (CLAVATA3/ESR-RELATED 14); protein binding / receptor binding (85 aa)
     
   
  0.492
Bra016279
AT1G26600 (E=3e-037) CLE9 | CLE9 (CLAVATA3/ESR-RELATED 9); protein binding / receptor binding (116 aa)
           
  0.489
Bra012451
AT1G26600 (E=2e-032) CLE9 | CLE9 (CLAVATA3/ESR-RELATED 9); protein binding / receptor binding (118 aa)
           
  0.479
Bra006149
AT5G12235 (E=7e-027) CLE22 | CLE22 (CLAVATA3/ESR-RELATED 22); protein binding / receptor binding (101 aa)
           
  0.478
Bra032484
AT1G05065 (E=2e-024) CLE20 | CLE20 (CLAVATA3/ESR-RELATED 20); protein binding / receptor binding (76 aa)
           
  0.472
Bra015385
AT1G05065 (E=2e-026) CLE20 | CLE20 (CLAVATA3/ESR-RELATED 20); protein binding / receptor binding (77 aa)
           
  0.472
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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