STRINGSTRING
Bra004347 protein (Brassica rapa) - STRING interaction network
"Bra004347" - AT1G68910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004347AT1G68910 (E=2e-226) | unknown protein (671 aa)    
Predicted Functional Partners:
Bra040794
AT1G47200 (E=1e-052) WPP2 | WPP2 (173 aa)
       
 
  0.827
Bra040752
AT1G47200 (E=3e-054) WPP2 | WPP2 (166 aa)
       
 
  0.827
Bra011426
AT4G33200 (E=0.0) XI-I, ATXI-I, XI-15 | XI-I; motor/ protein binding (1517 aa)
       
 
  0.695
Bra009405
AT5G04990 (E=8e-193) | sad1/unc-84 protein-related (745 aa)
           
  0.503
Bra034012
AT1G67230 (E=0.0) LINC1 | LINC1 (LITTLE NUCLEI1) (1115 aa)
           
  0.475
Bra028067
AT1G34790 (E=9e-111) TT1 | TT1 (transparent testa 1); transcription factor (287 aa)
       
      0.445
Bra018638
AT1G08290 (E=7e-156) | zinc finger (C2H2 type) protein (WIP3) (337 aa)
       
      0.445
Bra014612
AT3G57670 (E=8e-148) NTT | NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding (364 aa)
       
      0.445
Bra004210
AT1G67230 (E=0.0) LINC1 | LINC1 (LITTLE NUCLEI1) (1067 aa)
           
  0.445
Bra029862
AT3G10730 (E=4e-183) | sad1/unc-84-like 2 family protein (449 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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