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Bra004356 protein (Brassica rapa) - STRING interaction network
"Bra004356" - AT1G69020 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004356AT1G69020 (E=1e-144) | prolyl oligopeptidase family protein (761 aa)    
Predicted Functional Partners:
Bra004323
AT1G68590 (E=1e-067) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (168 aa)
           
  0.583
Bra004027
AT1G68590 (E=3e-066) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (160 aa)
           
  0.583
Bra030822
AT5G36210 (E=0.0) | serine-type peptidase (681 aa)
       
 
  0.533
Bra005979
AT5G08260 (E=2e-235) scpl35 | scpl35 (serine carboxypeptidase-like 35); serine-type carboxypeptidase (479 aa)
           
  0.485
Bra008678
AT5G15760 (E=6e-074) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (179 aa)
           
  0.483
Bra023904
AT3G21110 (E=5e-212) PUR7, PURC, ATPURC | PUR7 (PURIN 7); phosphoribosylaminoimidazolesuccinocarboxamide synthase (408 aa)
         
  0.469
Bra005171
AT2G37690 (E=2e-026) | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (62 aa)
         
  0.469
Bra001811
AT3G21110 (E=6e-216) PUR7, PURC, ATPURC | PUR7 (PURIN 7); phosphoribosylaminoimidazolesuccinocarboxamide synthase (413 aa)
         
  0.469
Bra011653
AT4G35987 (E=7e-146) | unknown protein (305 aa)
           
  0.459
Bra039731
AT4G14570 (E=0.0) | acylaminoacyl-peptidase-related (766 aa)
       
 
  0.443
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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