STRINGSTRING
Bra004364 protein (Brassica rapa) - STRING interaction network
"Bra004364" - AT1G69180 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004364AT1G69180 (E=1e-079) CRC | CRC (CRABS CLAW); transcription factor (171 aa)    
Predicted Functional Partners:
Bra013364
AT4G18960 (E=1e-118) AG | AG (AGAMOUS); DNA binding / transcription factor (252 aa)
     
   
  0.566
Bra011740
AT4G36930 (E=1e-122) SPT | SPT (SPATULA); DNA binding / transcription factor (354 aa)
           
  0.535
Bra010591
AT4G36930 (E=4e-101) SPT | SPT (SPATULA); DNA binding / transcription factor (341 aa)
           
  0.535
Bra004716
AT2G42830 (E=4e-115) SHP2, AGL5 | SHP2 (SHATTERPROOF 2); protein binding / transcription factor (244 aa)
     
   
  0.505
Bra007067
AT3G54340 (E=1e-113) AP3, ATAP3 | AP3 (APETALA 3); DNA binding / transcription factor (232 aa)
           
  0.504
Bra006549
AT5G20240 (E=4e-106) PI | PI (PISTILLATA); DNA binding / transcription factor (208 aa)
           
  0.503
Bra014822
AT3G54340 (E=6e-104) AP3, ATAP3 | AP3 (APETALA 3); DNA binding / transcription factor (224 aa)
           
  0.491
Bra014552
AT3G58780 (E=2e-129) SHP1, AGL1 | SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor (248 aa)
     
   
  0.484
Bra012564
AT4G18960 (E=1e-110) AG | AG (AGAMOUS); DNA binding / transcription factor (251 aa)
     
   
  0.484
ARF3-1
AT2G33860 (E=2e-272) ETT, ARF3 | ETT (ETTIN); DNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (605 aa)
           
  0.479
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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