STRINGSTRING
Bra004366 protein (Brassica rapa) - STRING interaction network
"Bra004366" - AT1G69220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004366AT1G69220 (E=4e-175) SIK1 | SIK1; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (860 aa)    
Predicted Functional Partners:
Bra017601
AT5G45550 (E=1e-125) | mob1/phocein family protein (215 aa)
       
  0.938
Bra026241
AT4G17270 (E=4e-042) | Mo25 family protein (278 aa)
       
  0.912
Bra024936
AT5G47540 (E=1e-174) | binding (334 aa)
       
  0.912
Bra022139
AT5G47540 (E=9e-185) | binding (343 aa)
       
  0.912
Bra017480
AT5G47540 (E=5e-161) | binding (386 aa)
       
  0.912
Bra017387
AT2G03410 (E=1e-170) | Mo25 family protein (344 aa)
       
  0.912
Bra014431
AT5G47540 (E=7e-061) | binding (138 aa)
       
  0.912
Bra012670
AT4G17270 (E=2e-173) | Mo25 family protein (339 aa)
       
  0.912
Bra002195
AT5G18940 (E=4e-171) | Mo25 family protein (345 aa)
       
  0.912
Bra033489
AT4G14350 (E=4e-241) | protein kinase family protein (1011 aa)
     
0.849
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]