STRINGSTRING
Bra004372 protein (Brassica rapa) - STRING interaction network
"Bra004372" - AT1G69325 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004372AT1G69325 (E=5e-038) | remorin family protein (107 aa)    
Predicted Functional Partners:
Bra040466
AT1G65240 (E=1e-229) | aspartyl protease family protein (472 aa)
           
  0.541
Bra011229
AT4G30880 (E=2e-049) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (110 aa)
           
  0.503
Bra009348
AT3G52350 (E=5e-017) | D111/G-patch domain-containing protein (121 aa)
           
  0.483
Bra028441
AT5G39820 (E=3e-140) anac094 | anac094 (Arabidopsis NAC domain containing protein 94); transcription factor (335 aa)
           
  0.478
Bra033805
AT5G40010 (E=2e-218) AATP1 | AATP1 (AAA-ATPase 1); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (499 aa)
           
  0.471
Bra031095
AT5G08535 (E=1e-019) | D111/G-patch domain-containing protein (122 aa)
           
  0.459
Bra021471
AT3G44290 (E=9e-164) anac060 | anac060 (Arabidopsis NAC domain containing protein 60); transcription factor (338 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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