STRINGSTRING
Bra004375 protein (Brassica rapa) - STRING interaction network
"Bra004375" - AT1G26620 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004375AT1G26620 (E=7e-162) | unknown protein (834 aa)    
Predicted Functional Partners:
Bra005384
AT2G34890 (E=1e-279) | CTP synthase, putative / UTP--ammonia ligase, putative ; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (621 aa)
           
  0.549
Bra008529
AT4G00750 (E=0.0) | dehydration-responsive family protein (621 aa)
           
  0.541
Bra004933
AT2G45750 (E=0.0) | dehydration-responsive family protein (632 aa)
           
  0.541
Bra038299
AT3G45090 (E=0.0) | 2-phosphoglycerate kinase-related (713 aa)
           
  0.511
Bra020231
AT5G60760 (E=2e-312) | 2-phosphoglycerate kinase-related (719 aa)
           
  0.511
Bra002454
AT5G60760 (E=0.0) | 2-phosphoglycerate kinase-related (725 aa)
           
  0.511
Bra039319
AT2G45750 (E=0.0) | dehydration-responsive family protein (632 aa)
           
  0.465
Bra032013
AT3G03150 (E=4e-043) | unknown protein (119 aa)
           
  0.461
Bra001073
AT3G03150 (E=4e-047) | unknown protein (117 aa)
           
  0.461
Bra038775
AT4G21430 (E=0.0) B160 | B160; protein binding / transcription factor/ zinc ion binding (918 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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