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Bra004376 protein (Brassica rapa) - STRING interaction network
"Bra004376" - AT1G69370 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004376AT1G69370 (E=5e-106) CM3, cm-3 | CM3 (chorismate mutase 3); chorismate mutase (337 aa)    
Predicted Functional Partners:
Bra011921
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (937 aa)
   
 
  0.975
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
     
  0.971
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
     
  0.969
Bra032268
AT1G48850 (E=5e-219) EMB1144 | EMB1144 (embryo defective 1144); chorismate synthase (438 aa)
   
  0.969
Bra014158
AT1G48850 (E=9e-215) EMB1144 | EMB1144 (embryo defective 1144); chorismate synthase (441 aa)
   
  0.969
Bra035662
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (899 aa)
   
 
  0.968
Bra034372
AT2G27820 (E=2e-172) PD1, ADT3 | PD1 (PREPHENATE DEHYDRATASE 1); arogenate dehydratase/ prephenate dehydratase ; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (418 aa)
     
  0.964
Bra029665
AT3G07630 (E=7e-186) ADT2 | ADT2 (arogenate dehydratase 2); arogenate dehydratase/ prephenate dehydratase ; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (379 aa)
     
  0.964
Bra016813
AT1G11790 (E=7e-184) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (383 aa)
     
  0.964
Bra038340
AT1G68890 (E=0.0) | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding (1710 aa)
         
  0.951
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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