STRINGSTRING
Bra004378 protein (Brassica rapa) - STRING interaction network
"Bra004378" - AT1G69390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004378AT1G69390 (E=5e-098) ATMINE1 | ATMINE1 (Arabidopsis homologue of bacterial MinE 1); protein binding (221 aa)    
Predicted Functional Partners:
Bra009723
AT5G24020 (E=2e-095) MIND, ARC11, ATMIND1 | MIND; ATPase/ calcium-dependent ATPase/ protein binding / protein homodimerization (174 aa)
     
 
  0.959
Bra015875
AT1G75010 (E=0.0) ARC3 | ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3) (739 aa)
       
 
  0.756
Bra002918
AT5G55280 (E=5e-168) FTSZ1-1, ATFTSZ1-1, CPFTSZ | FTSZ1-1; protein binding / structural molecule (411 aa)
     
   
  0.629
Bra017252
AT2G36250 (E=2e-208) FTSZ2-1, ATFTSZ2-1 | FTSZ2-1; protein binding / structural molecule (477 aa)
     
   
  0.619
Bra035565
AT5G55280 (E=9e-162) FTSZ1-1, ATFTSZ1-1, CPFTSZ | FTSZ1-1; protein binding / structural molecule (363 aa)
     
   
  0.597
Bra030306
AT2G21280 (E=9e-167) GC1, ATSULA, SULA | SULA; binding / catalytic/ coenzyme binding (352 aa)
           
  0.577
Bra033637
AT5G42480 (E=0.0) ARC6 | ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); protein binding (783 aa)
     
   
  0.568
Bra038229
AT3G19720 (E=0.0) ARC5 | ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5); GTP binding / GTPase (786 aa)
     
   
  0.534
Bra017792
AT4G37190 (E=1e-259) | INVOLVED IN- protein polymerization; LOCATED IN- cytosol, plasma membrane; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Beta tubulin, autoregulation binding site (InterPro-IPR013838), Tubulin/FtsZ, GTPase (InterPro-IPR003008); Has 251 Blast hits to 250 proteins in 111 species- Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 89; Plants - 28; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink). (548 aa)
           
  0.531
Bra006945
AT3G52750 (E=7e-203) FTSZ2-2 | FTSZ2-2; GTP binding / GTPase/ structural molecule (463 aa)
     
   
  0.512
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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