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Bra004379 protein (Brassica rapa) - STRING interaction network
"Bra004379" - AT1G69410 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004379AT1G69410 (E=2e-086) ATELF5A-3, ELF5A-3 | ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (158 aa)    
Predicted Functional Partners:
Bra028746
AT5G05980 (E=2e-236) ATDFB, DFB | ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase (867 aa)
     
  0.979
Bra009150
AT5G05920 (E=2e-207) DHS, EDA22 | DHS (DEOXYHYPUSINE SYNTHASE) (368 aa)
     
  0.978
Bra038503
AT4G16720 (E=7e-108) | 60S ribosomal protein L15 (RPL15A) (204 aa)
     
   
  0.975
Bra038503.1-P
AT4G16720 (E=7e-108) | 60S ribosomal protein L15 (RPL15A) (204 aa)
     
   
  0.975
Bra012694
AT4G16720 (E=1e-106) | 60S ribosomal protein L15 (RPL15A) (275 aa)
     
   
  0.975
Bra012667.1-P
AT4G16720 (E=4e-107) | 60S ribosomal protein L15 (RPL15A) (204 aa)
     
   
  0.975
Bra037714
AT2G43460 (E=5e-034) | 60S ribosomal protein L38 (RPL38A) (69 aa)
     
        0.969
Bra014535
AT2G43460 (E=3e-031) | 60S ribosomal protein L38 (RPL38A) (110 aa)
     
        0.969
Bra003381
AT2G43460 (E=4e-018) | 60S ribosomal protein L38 (RPL38A) (73 aa)
     
        0.969
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
   
  0.925
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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