STRINGSTRING
Bra004381 protein (Brassica rapa) - STRING interaction network
"Bra004381" - AT1G69450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004381AT1G69450 (E=0.0) | LOCATED IN- endomembrane system, membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF221 (InterPro-IPR003864); BEST Arabidopsis thaliana protein match is- HYP1 (HYPOTHETICAL PROTEIN 1) (TAIR-AT3G01100.1); Has 911 Blast hits to 825 proteins in 137 species- Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 442; Plants - 243; Viruses - 0; Other Eukaryotes - 74 (source- NCBI BLink). (715 aa)    
Predicted Functional Partners:
Bra007144
AT1G48350 (E=2e-024) | ribosomal protein L18 family protein (181 aa)
     
      0.491
Bra018640
AT2G27600 (E=1e-227) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (430 aa)
       
      0.478
Bra012009
AT2G27600 (E=2e-222) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
       
      0.478
Bra000503
AT2G27600 (E=1e-236) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
       
      0.478
Bra039023
AT2G19830 (E=2e-074) SNF7.2, VPS32 | SNF7.2 (215 aa)
       
      0.438
Bra036700
AT2G19830 (E=7e-082) SNF7.2, VPS32 | SNF7.2 (212 aa)
       
      0.438
Bra024160
AT4G29160 (E=7e-067) SNF7.1 | SNF7.1 (213 aa)
       
      0.438
Bra015055
AT4G29160 (E=9e-040) SNF7.1 | SNF7.1 (156 aa)
       
      0.438
Bra011085
AT4G29160 (E=3e-066) SNF7.1 | SNF7.1 (212 aa)
       
      0.438
Bra000131
AT2G39390 (E=1e-058) | 60S ribosomal protein L35 (RPL35B) (204 aa)
     
   
  0.405
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]