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Bra004390 protein (Brassica rapa) - STRING interaction network
"Bra004390" - AT1G69523 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004390AT1G69523 (E=6e-097) | UbiE/COQ5 methyltransferase family protein (310 aa)    
Predicted Functional Partners:
Bra011405
AT4G33010 (E=0.0) AtGLDP1 | AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogenase (decarboxylating)/ pyridoxal phosphate binding (1045 aa)
         
    0.867
Bra024550
AT1G22940 (E=3e-253) TH1, TH-1, THIE | TH1 (THIAMINE REQUIRING 1); hydroxymethylpyrimidine kinase/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase (526 aa)
         
  0.729
Bra012027
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.707
Bra031378
AT1G22270 (E=2e-040) | unknown protein (127 aa)
     
 
  0.707
Bra012318
AT1G22270 (E=2e-049) | unknown protein (125 aa)
     
 
  0.707
Bra012027.1-P
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.707
Bra004758
AT2G43360 (E=2e-183) BIO2, BIOB | BIO2 (BIOTIN AUXOTROPH 2); biotin synthase (375 aa)
   
 
  0.677
Bra000303
AT2G43360 (E=4e-186) BIO2, BIOB | BIO2 (BIOTIN AUXOTROPH 2); biotin synthase (380 aa)
   
 
  0.677
Bra029919
AT3G48780 (E=9e-272) ATSPT1, SPT1 | SPT1 (SERINE PALMITOYLTRANSFERASE 1); serine C-palmitoyltransferase (489 aa)
   
 
  0.666
Bra019567
AT5G23670 (E=3e-181) LCB2 | LCB2; protein binding / serine C-palmitoyltransferase (390 aa)
   
 
  0.666
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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