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Bra004395 protein (Brassica rapa) - STRING interaction network
"Bra004395" - AT3G27740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004395AT3G27740 (E=6e-229) CARA | CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)/ carbamoyl-phosphate synthase/ catalytic (430 aa)    
Predicted Functional Partners:
Bra032344
AT1G29900 (E=0.0) CARB | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ catalytic (1176 aa)
  0.999
Bra035791
AT3G20320 (E=5e-186) TGD2 | TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2); lipid transporter/ phospholipid binding (777 aa)
  0.999
Bra038263
AT3G20330 (E=3e-106) | aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) (363 aa)
  0.999
Bra014814
AT3G54470 (E=7e-216) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (474 aa)
   
 
  0.998
Bra003186
AT3G54470 (E=9e-235) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (469 aa)
   
 
  0.998
Bra019206
AT4G24830 (E=2e-151) | arginosuccinate synthase family (517 aa)
   
 
  0.988
Bra013839
AT4G24830 (E=3e-248) | arginosuccinate synthase family (499 aa)
   
 
  0.988
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
 
  0.985
Bra003758
AT1G75330 (E=2e-183) OTC | OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ ornithine carbamoyltransferase (377 aa)
   
 
  0.983
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
   
 
  0.983
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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