STRINGSTRING
Bra004406 protein (Brassica rapa) - STRING interaction network
"Bra004406" - AT1G69680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004406AT1G69680 (E=5e-098) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro-IPR016124), Ran-interacting Mog1 protein (InterPro-IPR007681), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro-IPR016123); Has 202 Blast hits to 202 proteins in 100 species- Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 83; Plants - 25; Viruses - 0; Other Eukaryotes - 39 (source- NCBI BLink). (202 aa)    
Predicted Functional Partners:
Bra035562
AT5G55190 (E=9e-121) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
 
  0.949
Bra020079
AT5G19990 (E=6e-228) RPT6A, ATSUG1 | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase (721 aa)
     
 
  0.949
Bra006530
AT5G20010 (E=2e-118) RAN-1, RAN1, ATRAN1 | RAN-1; GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
 
  0.949
Bra002926
AT5G55190 (E=4e-119) RAN3, ATRAN3 | RAN3 (RAN GTPASE 3); GTP binding / GTPase/ protein binding ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
 
  0.949
Bra032859
AT1G27970 (E=3e-066) NTF2B | NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (127 aa)
       
 
  0.791
Bra032818
AT1G27310 (E=1e-049) NTF2A | NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter (129 aa)
       
 
  0.791
Bra030069
AT1G27970 (E=4e-066) NTF2B | NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (123 aa)
       
 
  0.791
Bra030035
AT1G27310 (E=2e-048) NTF2A | NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter (167 aa)
       
 
  0.791
Bra016831
AT1G11570 (E=5e-025) NTL | nuclear transport factor 2 (NTF2), putative (53 aa)
       
 
  0.791
Bra010953
AT1G27310 (E=4e-065) NTF2A | NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter (122 aa)
       
 
  0.791
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]