STRINGSTRING
Bra004407 protein (Brassica rapa) - STRING interaction network
"Bra004407" - AT1G69690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004407AT1G69690 (E=2e-098) | TCP family transcription factor, putative (321 aa)    
Predicted Functional Partners:
Bra027886
AT1G58100 (E=4e-120) | TCP family transcription factor, putative (394 aa)
       
 
0.894
Bra000395
AT2G45680 (E=9e-099) | TCP family transcription factor, putative (311 aa)
       
 
0.661
Bra011712
AT4G36860 (E=5e-264) | zinc ion binding (598 aa)
       
 
  0.630
Bra000152
AT2G39830 (E=6e-267) DAR2 | DAR2 (DA1-RELATED PROTEIN 2); zinc ion binding (514 aa)
       
 
  0.627
Bra005011
AT2G39830 (E=7e-158) DAR2 | DAR2 (DA1-RELATED PROTEIN 2); zinc ion binding (501 aa)
       
 
  0.622
Bra024875
AT2G01570 (E=6e-207) RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor (573 aa)
       
      0.622
Bra025725
AT1G19270 (E=7e-262) DA1 | DA1 (DA 1); ubiquitin binding (527 aa)
       
 
  0.621
Bra011768
AT4G37460 (E=0.0) SRFR1 | SRFR1 (SUPPRESSOR OF RPS4-RLD 1); protein complex scaffold (1034 aa)
       
 
  0.612
Bra031991
AT1G66350 (E=3e-153) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor (505 aa)
       
      0.579
Bra030952
AT1G53230 (E=5e-045) TCP3 | TCP3; transcription factor (345 aa)
       
 
  0.570
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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