STRINGSTRING
Bra004408 protein (Brassica rapa) - STRING interaction network
"Bra004408" - AT1G69700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004408AT1G69700 (E=5e-080) ATHVA22C | ATHVA22C (186 aa)    
Predicted Functional Partners:
Bra027391
AT3G13870 (E=8e-202) RHD3 | RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding (770 aa)
       
 
  0.751
Bra025089
AT5G45160 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (831 aa)
       
 
  0.751
Bra016026
AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1141 aa)
       
 
  0.751
Bra003863
AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1200 aa)
       
 
  0.751
Bra001525
AT3G13870 (E=0.0) RHD3 | RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding ; Probable GTP-binding protein that may be involved in cell development (805 aa)
       
 
  0.751
Bra034102
AT3G10290 (E=4e-163) | phosphate translocator-related (569 aa)
     
   
  0.461
Bra040612
AT2G15280 (E=3e-082) | reticulon family protein (RTNLB10) (183 aa)
           
  0.457
Bra040012
AT3G10260 (E=2e-025) | reticulon family protein (93 aa)
           
  0.457
Bra039207
AT2G23640 (E=3e-089) | reticulon family protein (RTNLB13) (208 aa)
           
  0.457
Bra037594
AT3G18260 (E=8e-109) | reticulon family protein (RTNLB9) (224 aa)
           
  0.457
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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