STRINGSTRING
Bra004412 protein (Brassica rapa) - STRING interaction network
"Bra004412" - AT2G48120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004412AT2G48120 (E=7e-110) PAC | PAC (PALE CRESS) (309 aa)    
Predicted Functional Partners:
Bra029825
AT3G10230 (E=4e-257) LYC | LYC (LYCOPENE CYCLASE); lycopene beta cyclase (493 aa)
           
  0.541
Bra008569
AT5G17230 (E=4e-202) PSY | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase (425 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (15%) [HD]