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Bra004414 protein (Brassica rapa) - STRING interaction network
"Bra004414" - AT2G48100 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004414AT2G48100 (E=2e-154) | exonuclease family protein (327 aa)    
Predicted Functional Partners:
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.964
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.964
Bra027789
AT1G63780 (E=8e-145) IMP4 | IMP4 (294 aa)
     
        0.844
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
 
  0.838
Bra031190
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (972 aa)
     
      0.816
Bra030298
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (921 aa)
     
      0.816
Bra026592
AT2G02480 (E=0.0) STI | STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase (708 aa)
       
  0.781
Bra026217
AT1G14460 (E=0.0) | DNA polymerase-related (1025 aa)
       
  0.781
Bra025061
AT5G45720 (E=1e-212) | ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding (750 aa)
       
  0.781
Bra024816
AT2G02480 (E=0.0) STI | STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase (1213 aa)
       
  0.781
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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