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Bra004416 protein (Brassica rapa) - STRING interaction network
"Bra004416" - AT2G48080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004416AT2G48080 (E=2e-175) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (463 aa)    
Predicted Functional Partners:
Bra036853
AT3G50880 (E=9e-116) | HhH-GPD base excision DNA repair family protein (275 aa)
   
   
  0.504
Bra025741
AT1G19480 (E=3e-130) | HhH-GPD base excision DNA repair family protein (351 aa)
   
   
  0.504
Bra017944
AT1G21710 (E=6e-164) OGG1, ATOGG1 | OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1); oxidized purine base lesion DNA N-glycosylase (357 aa)
   
   
  0.504
Bra016505
AT1G19485 (E=0.0) | AT hook motif-containing protein (831 aa)
   
   
  0.504
Bra003760
AT1G75230 (E=6e-115) | HhH-GPD base excision DNA repair family protein (339 aa)
   
   
  0.504
Bra031781
AT1G11780 (E=5e-165) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (339 aa)
           
  0.491
Bra027369
AT3G14160 (E=1e-124) | oxidoreductase (454 aa)
           
  0.491
Bra038536
AT2G22260 (E=2e-117) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (307 aa)
           
  0.485
Bra000619
AT5G50320 (E=1e-306) ELO3, HAG3, HAC8 | ELO3 (ELONGATA 3); histone acetyltransferase (565 aa)
     
   
  0.483
Bra040992
AT1G36310 (E=3e-165) | methyltransferase (353 aa)
           
  0.481
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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