STRINGSTRING
Bra004418 protein (Brassica rapa) - STRING interaction network
"Bra004418" - AT2G48060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004418AT2G48060 (E=0.0) | unknown protein (2485 aa)    
Predicted Functional Partners:
Bra024486
AT4G36080 (E=0.0) | FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (3858 aa)
     
   
  0.465
Bra007237
AT3G56330 (E=4e-174) | N2,N2-dimethylguanosine tRNA methyltransferase family protein (338 aa)
           
  0.450
Bra016023
AT1G73020 (E=0.0) | unknown protein (674 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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