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Bra004420 protein (Brassica rapa) - STRING interaction network
"Bra004420" - AT2G47980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004420AT2G47980 (E=0.0) SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID COHESION PROTEIN 3); binding (1523 aa)    
Predicted Functional Partners:
Bra034328
AT2G27170 (E=0.0) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1243 aa)
     
  0.996
Bra000522
AT2G27170 (E=1e-200) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1097 aa)
     
  0.996
Bra007088
AT3G54670 (E=0.0) TTN8, SMC1, ATSMC1 | TTN8 (TITAN8); ATP binding / transporter (1237 aa)
     
  0.995
Bra013254
AT3G54670 (E=5e-291) TTN8, SMC1, ATSMC1 | TTN8 (TITAN8); ATP binding / transporter (1221 aa)
     
  0.994
Bra007459
AT3G59550 (E=4e-224) SYN3, ATRAD21.2, ATSYN3 | SYN3 (688 aa)
     
  0.989
Bra023522
AT5G15540 (E=0.0) EMB2773, ATSCC2, SCC2 | EMB2773 (EMBRYO DEFECTIVE 2773); binding / protein binding / zinc ion binding (1841 aa)
     
  0.989
Bra008693
AT5G15540 (E=0.0) EMB2773, ATSCC2, SCC2 | EMB2773 (EMBRYO DEFECTIVE 2773); binding / protein binding / zinc ion binding (1832 aa)
     
  0.989
Bra006346
AT5G16270 (E=0.0) ATRAD21.3, SYN4 | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (1022 aa)
     
  0.989
Bra023558
AT5G16270 (E=0.0) ATRAD21.3, SYN4 | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (992 aa)
     
  0.988
Bra008628
AT5G16270 (E=0.0) ATRAD21.3, SYN4 | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) (1016 aa)
     
  0.988
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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