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Bra004436 protein (Brassica rapa) - STRING interaction network
"Bra004436" - AT2G47700 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004436AT2G47700 (E=4e-147) | zinc finger (C3HC4-type RING finger) family protein (379 aa)    
Predicted Functional Partners:
Bra033264
AT1G01440 (E=2e-115) | extra-large G-protein-related (581 aa)
       
      0.489
Bra023158
AT1G61660 (E=1e-023) | basic helix-loop-helix (bHLH) family protein (142 aa)
       
      0.489
Bra002510
AT5G60120 (E=5e-161) TOE2 | TOE2; DNA binding / transcription factor (452 aa)
       
      0.489
Bra024818
AT2G02450 (E=1e-152) ANAC035 | ANAC035 (Arabidopsis NAC domain containing protein 35); transcription factor (407 aa)
           
  0.406
Bra008669
AT5G15840 (E=2e-119) CO, FG | CO (CONSTANS); transcription factor/ transcription regulator/ zinc ion binding (366 aa)
       
 
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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