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Bra004438 protein (Brassica rapa) - STRING interaction network
"Bra004438" - AT2G47680 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004438AT2G47680 (E=0.0) | zinc finger (CCCH type) helicase family protein (1008 aa)    
Predicted Functional Partners:
Bra019919
AT1G10580 (E=1e-303) | transducin family protein / WD-40 repeat family protein (565 aa)
     
  0.953
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.941
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
    0.923
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
 
    0.923
Bra033025
AT3G27730 (E=0.0) RCK, MER3 | RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase/ DNA helicase (1094 aa)
     
  0.887
Bra029333
AT5G61140 (E=0.0) | DEAD box RNA helicase, putative (2133 aa)
     
  0.887
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
     
  0.880
Bra040938
AT4G32700 (E=0.0) | DNA-directed DNA polymerase family protein (2127 aa)
   
  0.867
Bra011372
AT4G32700 (E=0.0) | DNA-directed DNA polymerase family protein (2299 aa)
   
  0.867
Bra008501
AT1G79940 (E=3e-025) ATERDJ2A | ATERDJ2A; heat shock protein binding / unfolded protein binding (357 aa)
     
  0.835
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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