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Bra004439 protein (Brassica rapa) - STRING interaction network
"Bra004439" - AT2G47670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004439AT2G47670 (E=3e-063) | invertase/pectin methylesterase inhibitor family protein (206 aa)    
Predicted Functional Partners:
Bra012157
AT5G67360 (E=0.0) ARA12 | ARA12; serine-type endopeptidase (760 aa)
           
  0.573
Bra010370
AT4G28370 (E=1e-296) | protein binding / zinc ion binding (565 aa)
           
  0.489
Bra020658
AT5G49180 (E=4e-237) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (570 aa)
           
  0.483
Bra037739
AT2G43050 (E=1e-241) ATPMEPCRD | ATPMEPCRD; enzyme inhibitor/ pectinesterase (516 aa)
           
  0.412
Bra029200
AT5G63800 (E=0.0) MUM2, BGAL6 | MUM2 (MUCILAGE-MODIFIED 2); beta-galactosidase (720 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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