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Bra004441 protein (Brassica rapa) - STRING interaction network
"Bra004441" - AT2G47620 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004441AT2G47620 (E=8e-155) ATSWI3A, CHB1 | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A); DNA binding (514 aa)    
Predicted Functional Partners:
Bra022223
AT3G17590 (E=1e-117) BSH, CHE1 | BSH (BUSHY GROWTH); chromatin binding / protein binding (236 aa)
     
  0.979
Bra000114
AT2G28290 (E=0.0) SYD, CHR3 | SYD (SPLAYED); ATPase/ chromatin binding (3275 aa)
     
  0.973
Bra006242
AT5G14170 (E=8e-202) CHC1 | CHC1 (503 aa)
     
  0.971
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
  0.971
Bra040237
AT3G06010 (E=0.0) ATCHR12 | ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding (1100 aa)
     
  0.970
Bra039296
AT2G46020 (E=0.0) CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative (2137 aa)
     
  0.970
Bra000409
AT2G46020 (E=0.0) CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative (2162 aa)
     
  0.970
Bra030594
AT1G04880 (E=6e-131) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (409 aa)
     
  0.964
Bra038010
AT1G55650 (E=2e-071) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (324 aa)
     
  0.964
Bra034683
AT3G13350 (E=1e-054) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (300 aa)
     
  0.964
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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