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Bra004442 protein (Brassica rapa) - STRING interaction network
"Bra004442" - AT3G62870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004442AT3G62870 (E=1e-113) | 60S ribosomal protein L7A (RPL7aB) (256 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra037493
AT5G39740 (E=2e-131) OLI7, RPL5B | 60S ribosomal protein L5 (RPL5B) (313 aa)
 
  0.999
Bra028590
AT5G10360 (E=1e-108) EMB3010 | EMB3010 (embryo defective 3010); structural constituent of ribosome (249 aa)
   
  0.999
Bra011291
AT4G31700 (E=6e-100) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (250 aa)
   
  0.999
Bra010227
AT4G31700 (E=4e-100) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (250 aa)
   
  0.999
Bra009039
AT4G31700 (E=4e-111) RPS6 | RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (249 aa)
   
  0.999
Bra006056
AT5G10360 (E=4e-098) EMB3010 | EMB3010 (embryo defective 3010); structural constituent of ribosome (249 aa)
   
  0.999
Bra013215
AT3G25520 (E=1e-134) ATL5, PGY3, OLI5, RPL5A | ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding / structural constituent of ribosome (332 aa)
 
  0.999
Bra028546
AT3G53020 (E=2e-055) STV1, RPL24B, RPL24 | STV1 (SHORT VALVE1); structural constituent of ribosome (177 aa)
   
  0.999
Bra019632
AT3G53020 (E=2e-055) STV1, RPL24B, RPL24 | STV1 (SHORT VALVE1); structural constituent of ribosome (192 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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