STRINGSTRING
Bra004444 protein (Brassica rapa) - STRING interaction network
"Bra004444" - AT2G47590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004444AT2G47590 (E=7e-207) PHR2 | PHR2 (photolyase/blue-light receptor 2); DNA photolyase (455 aa)    
Predicted Functional Partners:
Bra031654
AT1G09020 (E=8e-252) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (488 aa)
         
  0.919
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
         
  0.919
Bra018586
AT1G09020 (E=2e-119) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (439 aa)
         
  0.919
Bra016951
AT2G41130 (E=1e-103) | basic helix-loop-helix (bHLH) family protein (254 aa)
       
  0.859
Bra014672
AT3G56770 (E=2e-072) | basic helix-loop-helix (bHLH) family protein (232 aa)
       
  0.859
Bra004599
AT2G41130 (E=2e-103) | basic helix-loop-helix (bHLH) family protein (250 aa)
       
  0.859
Bra033489
AT4G14350 (E=4e-241) | protein kinase family protein (1011 aa)
     
  0.844
Bra003096
AT5G52910 (E=4e-275) ATIM | ATIM (TIMELESS) (1174 aa)
       
  0.831
Bra036721
AT2G19470 (E=6e-219) ckl5 | ckl5 (Casein Kinase I-like 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (437 aa)
       
  0.766
Bra036426
AT3G03940 (E=0.0) | protein kinase family protein (704 aa)
       
  0.766
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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