STRINGSTRING
Bra004445 protein (Brassica rapa) - STRING interaction network
"Bra004445" - AT2G47580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004445AT2G47580 (E=3e-087) U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding (258 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.994
Bra031683
AT1G09760 (E=3e-080) U2A’ | U2A’ (U2 small nuclear ribonucleoprotein A); protein binding (306 aa)
     
  0.981
Bra030797
AT1G09760 (E=3e-086) U2A’ | U2A’ (U2 small nuclear ribonucleoprotein A); protein binding (256 aa)
     
  0.981
Bra019994
AT1G09760 (E=1e-078) U2A’ | U2A’ (U2 small nuclear ribonucleoprotein A); protein binding (261 aa)
     
  0.981
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
  0.981
Bra014389
AT2G47640 (E=1e-055) | small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (105 aa)
     
  0.978
Bra007706
AT3G62840 (E=2e-052) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Like-Sm ribonucleoprotein, core (InterPro-IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro-IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro-IPR010920); BEST Arabidopsis thaliana protein match is- small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR-AT2G47640. [...] (125 aa)
     
  0.978
Bra035318
AT2G43370 (E=1e-011) | U1 small nuclear ribonucleoprotein 70 kDa, putative (127 aa)
     
  0.978
Bra012098
AT3G50670 (E=3e-054) U1-70K, U1SNRNP | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding / nucleotide binding (178 aa)
     
  0.978
Bra007429
AT2G43370 (E=3e-017) | U1 small nuclear ribonucleoprotein 70 kDa, putative (79 aa)
     
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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