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Bra004452 protein (Brassica rapa) - STRING interaction network
"Bra004452" - AT2G47490 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004452AT2G47490 (E=3e-138) | mitochondrial substrate carrier family protein (306 aa)    
Predicted Functional Partners:
Bra030669
AT1G07050 (E=2e-063) | CONSTANS-like protein-related (383 aa)
       
 
  0.522
Bra007692
AT3G62650 (E=2e-058) | unknown protein (145 aa)
           
  0.456
Bra003503
AT3G62650 (E=5e-053) | unknown protein (145 aa)
           
  0.456
Bra015329
AT1G04570 (E=7e-225) | integral membrane transporter family protein (538 aa)
           
  0.420
Bra032401
AT3G08570 (E=2e-261) | protein binding / signal transducer (607 aa)
           
  0.418
Bra034305
AT2G26360 (E=1e-144) | binding (370 aa)
           
  0.414
Bra005633
AT2G32040 (E=6e-235) | integral membrane transporter family protein (507 aa)
           
  0.406
Bra000253
AT2G42070 (E=7e-137) ATNUDT23, ATNUDX23 | ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23); FAD diphosphatase/ hydrolase (278 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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