STRINGSTRING
Bra004459 protein (Brassica rapa) - STRING interaction network
"Bra004459" - AT2G47400 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004459AT2G47400 (E=4e-057) CP12-1, CP12 | CP12-1 (127 aa)    
Predicted Functional Partners:
Bra026948
AT1G12900 (E=5e-198) GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (399 aa)
     
 
  0.852
Bra019797
AT1G12900 (E=2e-199) GAPA-2 | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (399 aa)
     
 
  0.852
Bra023235
AT1G32060 (E=3e-210) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (397 aa)
   
 
  0.718
Bra033861
AT1G32060 (E=2e-196) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (395 aa)
   
 
  0.717
Bra034927
AT1G42970 (E=7e-234) GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase (448 aa)
     
 
  0.635
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
 
  0.578
Bra037380
AT4G01150 (E=7e-064) | unknown protein (162 aa)
   
        0.534
Bra008533
AT4G01150 (E=1e-063) | unknown protein (169 aa)
   
        0.534
Bra000947
AT4G01150 (E=5e-068) | unknown protein (164 aa)
   
        0.534
Bra006034
AT5G09820 (E=4e-124) | plastid-lipid associated protein PAP / fibrillin family protein (270 aa)
   
          0.525
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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