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Bra004460 protein (Brassica rapa) - STRING interaction network
"Bra004460" - AT2G47390 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004460AT2G47390 (E=0.0) | serine-type endopeptidase/ serine-type peptidase (946 aa)    
Predicted Functional Partners:
Bra029523
AT4G04880 (E=4e-174) | adenosine/AMP deaminase family protein (355 aa)
   
 
  0.599
Bra039444
AT3G05350 (E=0.0) | aminopeptidase/ hydrolase (696 aa)
       
  0.574
Bra011704
AT4G36760 (E=2e-250) ATAPP1, APP1 | ATAPP1; N-1-naphthylphthalamic acid binding / aminopeptidase (620 aa)
       
  0.574
Bra010574
AT4G36760 (E=0.0) ATAPP1, APP1 | ATAPP1; N-1-naphthylphthalamic acid binding / aminopeptidase (640 aa)
       
  0.574
Bra033141
AT4G11640 (E=3e-150) ATSR | ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE); serine racemase (373 aa)
         
  0.536
Bra032109
AT2G24280 (E=1e-268) | serine carboxypeptidase S28 family protein (494 aa)
         
  0.536
Bra027943
AT2G24280 (E=2e-014) | serine carboxypeptidase S28 family protein (141 aa)
         
  0.536
Bra024418
AT5G65760 (E=1e-263) | serine carboxypeptidase S28 family protein (833 aa)
         
  0.536
Bra023178
AT2G24280 (E=4e-064) | serine carboxypeptidase S28 family protein (222 aa)
         
  0.536
Bra020221
AT5G22860 (E=2e-056) | serine carboxypeptidase S28 family protein (280 aa)
         
  0.536
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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