STRINGSTRING
Bra004461 protein (Brassica rapa) - STRING interaction network
"Bra004461" - AT2G16760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004461AT2G16760 (E=2e-157) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- endoplasmic reticulum; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Six-bladed beta-propeller, TolB-like (InterPro-IPR011042); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G47370.1); Has 78 Blast hits to 78 proteins in 24 species- Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (325 aa)    
Predicted Functional Partners:
Bra035239
AT4G11260 (E=6e-166) ATSGT1B, ETA3, RPR1, EDM1, SGT1B | SGT1B; protein binding (355 aa)
           
  0.507
Bra019295
AT4G23570 (E=1e-161) SGT1A | SGT1A; protein binding (343 aa)
           
  0.507
Bra013710
AT4G23570 (E=6e-123) SGT1A | SGT1A; protein binding (322 aa)
           
  0.507
Bra000741
AT4G11260 (E=9e-157) ATSGT1B, ETA3, RPR1, EDM1, SGT1B | SGT1B; protein binding (358 aa)
           
  0.507
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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