STRINGSTRING
Bra004467 protein (Brassica rapa) - STRING interaction network
"Bra004467" - AT2G47240 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004467AT2G47240 (E=0.0) CER8, LACS1 | long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (697 aa)    
Predicted Functional Partners:
Bra010652
AT4G39850 (E=0.0) PXA1, PED3, CTS | PXA1 (PEROXISOMAL ABC TRANSPORTER 1); ATPase, coupled to transmembrane movement of substances (1433 aa)
     
 
  0.947
Bra040296
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
   
 
  0.824
Bra029608
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
   
 
  0.824
Bra024170
AT4G29010 (E=2e-186) AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (737 aa)
   
 
  0.824
Bra011076
AT4G29010 (E=0.0) AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (722 aa)
   
 
  0.824
Bra010347
AT4G29010 (E=0.0) AIM1 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase (734 aa)
   
 
  0.824
Bra001221
AT3G06860 (E=0.0) MFP2, ATMFP2 | MFP2 (MULTIFUNCTIONAL PROTEIN 2); 3-hydroxyacyl-CoA dehydrogenase/ enoyl-CoA hydratase (725 aa)
   
 
  0.824
Bra040093
AT4G16760 (E=0.0) ACX1, ATACX1 | ACX1 (ACYL-COA OXIDASE 1); acyl-CoA oxidase (664 aa)
   
  0.806
Bra023025
AT2G35690 (E=0.0) ACX5 | ACX5 (ACYL-COA OXIDASE 5); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors (664 aa)
   
  0.806
Bra015782
AT1G76150 (E=2e-095) ECH2, ATECH2 | maoC-like dehydratase domain-containing protein (299 aa)
   
 
  0.787
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]