STRINGSTRING
Bra004468 protein (Brassica rapa) - STRING interaction network
"Bra004468" - AT1G26540 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004468AT1G26540 (E=5e-049) | agenet domain-containing protein (458 aa)    
Predicted Functional Partners:
Bra036077
AT1G20790 (E=7e-081) | F-box family protein (378 aa)
           
  0.483
Bra023665
AT5G18130 (E=4e-102) | unknown protein (276 aa)
           
  0.483
Bra016452
AT1G20790 (E=3e-095) | F-box family protein (378 aa)
           
  0.483
Bra015021
AT3G23950 (E=4e-142) | F-box family protein (432 aa)
           
  0.483
Bra006441
AT5G18130 (E=3e-101) | unknown protein (262 aa)
           
  0.483
Bra002136
AT5G18130 (E=3e-107) | unknown protein (276 aa)
           
  0.483
Bra009226
AT5G06780 (E=1e-125) | emsy N terminus domain-containing protein / ENT domain-containing protein (309 aa)
           
  0.456
Bra036862
AT3G50800 (E=1e-049) | unknown protein (148 aa)
           
  0.403
Bra012887
AT3G50800 (E=3e-053) | unknown protein (156 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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