STRINGSTRING
Bra004471 protein (Brassica rapa) - STRING interaction network
"Bra004471" - AT2G47210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004471AT2G47210 (E=5e-099) | myb family transcription factor (432 aa)    
Predicted Functional Partners:
Bra034727
AT3G12810 (E=0.0) PIE1, SRCAP, chr13 | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase/ nucleic acid binding (2019 aa)
     
  0.973
Bra037834
AT5G67630 (E=8e-034) | DNA helicase, putative (93 aa)
     
  0.970
Bra024433
AT5G67630 (E=8e-236) | DNA helicase, putative (466 aa)
     
  0.970
Bra039907
AT2G18000 (E=4e-075) TAF14 | TAF14 (TBP-associated factor 14) (258 aa)
     
  0.969
Bra025069
AT5G45600 (E=9e-134) GAS41, TAF14B | GAS41; protein binding (261 aa)
     
  0.969
Bra020185
AT5G22330 (E=2e-239) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
     
  0.968
Bra006621
AT5G22330 (E=2e-240) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
     
  0.968
Bra002406
AT5G22330 (E=2e-253) ATTIP49A, RIN1 | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1); protein binding (458 aa)
     
  0.968
Bra035084
AT1G79020 (E=2e-218) | transcription factor-related (453 aa)
     
  0.962
Bra028782
AT5G04670 (E=1e-065) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- nucleic acid binding (TAIR-AT4G32620.2); Has 197 Blast hits to 193 proteins in 56 species- Archae - 0; Bacteria - 2; Metazoa - 139; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 13 (source- NCBI BLink). (580 aa)
     
  0.962
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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