STRINGSTRING
Bra004478 protein (Brassica rapa) - STRING interaction network
"Bra004478" - AT2G47090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004478AT2G47090 (E=4e-083) | nucleic acid binding / protein binding / zinc ion binding (669 aa)    
Predicted Functional Partners:
Bra016640
AT1G16330 (E=1e-176) CYCB3;1 | CYCB3;1 (cyclin b3;1); cyclin-dependent protein kinase (655 aa)
     
      0.861
Bra026248
AT4G17410 (E=2e-270) | zinc ion binding (939 aa)
       
      0.623
Bra017486
AT5G47430 (E=6e-307) | zinc ion binding (874 aa)
       
      0.623
Bra004870
AT5G47430 (E=4e-011) | zinc ion binding (117 aa)
       
      0.623
Bra009086
AT5G05080 (E=1e-084) UBC22 | UBC22 (ubiquitin-conjugating enzyme 22); ubiquitin-protein ligase (201 aa)
       
 
  0.619
Bra009085
AT5G05080 (E=2e-025) UBC22 | UBC22 (ubiquitin-conjugating enzyme 22); ubiquitin-protein ligase (129 aa)
       
 
  0.619
Bra005836
AT5G05080 (E=5e-118) UBC22 | UBC22 (ubiquitin-conjugating enzyme 22); ubiquitin-protein ligase (319 aa)
       
 
  0.619
Bra008282
AT1G76850 (E=3e-291) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (1147 aa)
       
      0.584
Bra008281
AT1G76850 (E=4e-017) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (414 aa)
       
      0.584
Bra003706
AT1G76850 (E=0.0) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (1082 aa)
       
      0.584
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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