STRINGSTRING
Bra004483 protein (Brassica rapa) - STRING interaction network
"Bra004483" - AT2G47010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004483AT2G47010 (E=8e-228) | unknown protein (475 aa)    
Predicted Functional Partners:
Bra026699
AT1G16916 (E=1e-023) | unknown protein (68 aa)
           
  0.441
Bra026697
AT1G16940 (E=1e-064) | F-box family protein (424 aa)
           
  0.441
Bra026676
AT1G17285 (E=2e-022) | unknown protein (97 aa)
           
  0.441
Bra026013
AT1G16950 (E=3e-032) | unknown protein (94 aa)
           
  0.441
Bra025999
AT1G17145 (E=1e-135) | protein binding / zinc ion binding (330 aa)
           
  0.441
Bra025988
AT1G17230 (E=0.0) | ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (1110 aa)
           
  0.441
Bra021831
AT2G33170 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (1123 aa)
           
  0.441
Bra016622
AT1G16960 (E=2e-049) | unknown protein (114 aa)
           
  0.441
Bra016601
AT1G17430 (E=2e-166) | hydrolase, alpha/beta fold family protein (333 aa)
           
  0.441
Bra008505
AT5G63930 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (1089 aa)
           
  0.441
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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