STRINGSTRING
Bra004486 protein (Brassica rapa) - STRING interaction network
"Bra004486" - AT2G46980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004486AT2G46980 (E=3e-314) | unknown protein (769 aa)    
Predicted Functional Partners:
Bra004222
AT1G67370 (E=4e-265) ASY1, ATASY1 | ASY1 (ASYNAPTIC 1); DNA binding (599 aa)
       
 
  0.947
Bra000674
AT4G09140 (E=0.0) ATMLH1, MLH1 | MLH1 (MUTL-HOMOLOGUE 1); protein binding, bridging (749 aa)
           
  0.541
Bra023796
AT3G22880 (E=6e-171) ATDMC1, DMC1, ARLIM15 | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (332 aa)
           
  0.489
Bra032982
AT3G27120 (E=2e-226) | ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (648 aa)
           
  0.485
Bra035777
AT3G20475 (E=2e-284) ATMSH5, MSH5 | MSH5 (MUTS-HOMOLOGUE 5); ATP binding / damaged DNA binding / mismatched DNA binding (845 aa)
     
   
  0.479
Bra029127
AT5G52290 (E=0.0) SHOC1 | SHOC1 (SHORTAGE IN CHIASMATA 1) (1605 aa)
     
   
  0.478
Bra021052
AT4G17380 (E=0.0) MSH4, ATMSH4 | MSH4 (MUTS HOMOLOG 4); ATP binding / damaged DNA binding / mismatched DNA binding (792 aa)
           
  0.476
Bra035016
AT1G22260 (E=3e-285) ZYP1a, ZYP1 | ZYP1a (877 aa)
           
  0.450
Bra003654
AT1G22260 (E=1e-270) ZYP1a, ZYP1 | ZYP1a (931 aa)
           
  0.450
Bra029467
AT4G30870 (E=1e-182) ATMUS81, MUS81 | MUS81 (MMS AND UV SENSITIVE 81); endonuclease/ nucleic acid binding (627 aa)
     
   
  0.427
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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