STRINGSTRING
Bra004498 protein (Brassica rapa) - STRING interaction network
"Bra004498" - AT2G46900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004498AT2G46900 (E=3e-217) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Basic helix-loop-helix, Nulp1-type (InterPro-IPR006994); Has 3014 Blast hits to 2357 proteins in 239 species- Archae - 2; Bacteria - 96; Metazoa - 1166; Fungi - 321; Plants - 100; Viruses - 47; Other Eukaryotes - 1282 (source- NCBI BLink). (615 aa)    
Predicted Functional Partners:
Bra000600
AT5G49930 (E=0.0) emb1441 | emb1441 (embryo defective 1441); nucleic acid binding / zinc ion binding (1092 aa)
     
 
  0.519
Bra006768
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2093 aa)
     
 
  0.507
Bra002652
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2113 aa)
     
 
  0.507
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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