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Bra004499 protein (Brassica rapa) - STRING interaction network
"Bra004499" - AT2G46890 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004499AT2G46890 (E=2e-170) | oxidoreductase, acting on the CH-CH group of donors (324 aa)    
Predicted Functional Partners:
Bra001914
AT3G23530 (E=0.0) | cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (876 aa)
 
        0.701
Bra014951
AT3G23530 (E=3e-187) | cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (816 aa)
 
        0.699
Bra014958
AT3G23530 (E=0.0) | cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (844 aa)
 
        0.698
Bra037027
AT4G33110 (E=2e-176) | coclaurine N-methyltransferase, putative (355 aa)
 
        0.696
Bra011414
AT4G33110 (E=8e-176) | coclaurine N-methyltransferase, putative (355 aa)
 
        0.694
Bra014950
AT3G23530 (E=4e-302) | cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (774 aa)
 
        0.692
Bra010795
AT1G30130 (E=4e-137) | unknown protein (306 aa)
 
          0.683
Bra023723
AT3G23530 (E=1e-062) | cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (380 aa)
 
          0.634
Bra023722
AT3G23470 (E=2e-220) | cyclopropane-fatty-acyl-phospholipid synthase (460 aa)
 
        0.609
Bra020182
AT5G22290 (E=1e-158) anac089 | anac089 (Arabidopsis NAC domain containing protein 89); transcription factor (343 aa)
       
      0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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