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Bra004504 protein (Brassica rapa) - STRING interaction network
"Bra004504" - AT2G46820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004504AT2G46820 (E=6e-050) PTAC8, TMP14, PSAP, PSI-P | PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (183 aa)    
Predicted Functional Partners:
Bra021327
AT1G54780 (E=3e-122) | thylakoid lumen 18.3 kDa protein (284 aa)
   
        0.653
Bra032672
AT4G12800 (E=1e-092) PSAL | PSAL (photosystem I subunit L) (219 aa)
   
 
  0.595
Bra034911
AT4G12800 (E=1e-099) PSAL | PSAL (photosystem I subunit L) (219 aa)
   
 
  0.593
Bra009067
AT5G09995 (E=2e-097) | unknown protein (247 aa)
   
          0.496
Bra022480
AT1G65420 (E=3e-064) | unknown protein (192 aa)
   
          0.472
Bra030268
AT2G21960 (E=2e-141) | unknown protein (327 aa)
   
        0.470
Bra024233
AT4G28030 (E=1e-118) | GCN5-related N-acetyltransferase (GNAT) family protein (264 aa)
   
        0.465
Bra030660
AT1G06680 (E=3e-113) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (261 aa)
   
        0.458
Bra015520
AT1G06680 (E=2e-119) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
   
        0.457
Bra028418
AT5G38660 (E=2e-113) APE1 | APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) (288 aa)
   
        0.432
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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