STRINGSTRING
Bra004507 protein (Brassica rapa) - STRING interaction network
"Bra004507" - AT2G46790 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004507AT2G46790 (E=1e-085) APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator (412 aa)    
Predicted Functional Partners:
Bra038831
AT2G18915 (E=0.0) LKP2, ADO2 | LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase (616 aa)
     
  0.816
Bra038830
AT2G18915 (E=0.0) LKP2, ADO2 | LKP2 (LOV KELCH PROTEIN 2); protein binding / ubiquitin-protein ligase (617 aa)
     
  0.816
Bra033291
AT1G01060 (E=3e-132) LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor (607 aa)
     
 
  0.808
Bra030496
AT1G01060 (E=5e-099) LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor (586 aa)
     
 
  0.808
Bra004503
AT2G46830 (E=2e-117) CCA1 | CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (552 aa)
       
 
  0.803
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.770
Bra035933
AT5G61380 (E=2e-098) TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator (509 aa)
     
 
0.726
Bra024536
AT1G22770 (E=0.0) GI, FB | GI (GIGANTEA) (1171 aa)
     
  0.716
Bra018060
AT3G48430 (E=0.0) REF6 | REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (1385 aa)
       
  0.709
Bra009474
AT5G04240 (E=0.0) ELF6 | ELF6 (EARLY FLOWERING 6); transcription factor (1160 aa)
       
  0.709
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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