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Bra004511 protein (Brassica rapa) - STRING interaction network
"Bra004511" - AT2G46750 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004511AT2G46750 (E=4e-310) | FAD-binding domain-containing protein (603 aa)    
Predicted Functional Partners:
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
 
  0.932
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
 
  0.932
Bra027370
AT3G14150 (E=2e-166) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (1001 aa)
   
 
  0.723
Bra006878
AT3G51800 (E=2e-173) ATG2 | ATG2; aminopeptidase/ metalloexopeptidase (796 aa)
   
 
  0.669
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
   
 
  0.662
Bra040893
AT3G51820 (E=9e-179) ATG4, G4, CHLG | G4; chlorophyll synthetase (388 aa)
       
  0.599
Bra038834
AT2G18950 (E=2e-190) HPT1, TPT1, ATHPT, VTE2 | HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); homogentisate phytyltransferase/ prenyltransferase (394 aa)
       
  0.599
Bra022431
AT3G51820 (E=1e-017) ATG4, G4, CHLG | G4; chlorophyll synthetase (103 aa)
       
  0.599
Bra034798
AT3G11945 (E=5e-178) ATHST | homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase (1084 aa)
       
  0.599
Bra022431.1-P
AT3G51820 (E=1e-017) ATG4, G4, CHLG | G4; chlorophyll synthetase (103 aa)
       
  0.599
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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