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Bra004513 protein (Brassica rapa) - STRING interaction network
"Bra004513" - AT2G46720 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004513AT2G46720 (E=6e-228) HIC, KCS13 | KCS13 (3-KETOACYL-COA SYNTHASE 13); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (587 aa)    
Predicted Functional Partners:
Bra021677
AT2G30920 (E=4e-072) ATCOQ3, EMB3002, COQ3 | ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3); hexaprenyldihydroxybenzoate methyltransferase/ polyprenyldihydroxybenzoate methyltransferase (328 aa)
              0.437
Bra019192
AT4G25080 (E=8e-069) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (135 aa)
              0.437
Bra019190
AT4G25080 (E=3e-027) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (93 aa)
              0.437
Bra015908
AT1G74470 (E=1e-235) | geranylgeranyl reductase (466 aa)
              0.437
Bra008152
AT1G74470 (E=1e-245) | geranylgeranyl reductase (466 aa)
              0.437
Bra004759
AT2G43400 (E=0.0) ETFQO | ETFQO (electron-transfer flavoprotein-ubiquinone oxidoreductase); catalytic/ electron carrier/ electron-transferring-flavoprotein dehydrogenase (626 aa)
              0.437
Bra007142
AT3G55120 (E=2e-107) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase (251 aa)
     
  0.420
Bra003209
AT3G55120 (E=2e-090) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase (227 aa)
     
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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