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Bra004517 protein (Brassica rapa) - STRING interaction network
"Bra004517" - AT2G46660 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004517AT2G46660 (E=1e-273) CYP78A6 | CYP78A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (528 aa)    
Predicted Functional Partners:
Bra036289
AT4G34890 (E=0.0) ATXDH1, XDH1 | XDH1 (XANTHINE DEHYDROGENASE 1); xanthine dehydrogenase (1355 aa)
         
  0.872
Bra034975
AT3G43600 (E=0.0) AAO2 | AAO2 (ALDEHYDE OXIDASE 2); aldehyde oxidase (1244 aa)
         
  0.872
Bra020140
AT5G20960 (E=0.0) AAO1, AO1, ATAO, ATAO1 | AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1); aldehyde oxidase/ indole-3-acetaldehyde oxidase (1347 aa)
         
  0.872
Bra019448
AT3G43600 (E=0.0) AAO2 | AAO2 (ALDEHYDE OXIDASE 2); aldehyde oxidase (1299 aa)
         
  0.872
Bra015330
AT1G04580 (E=0.0) AAO4, ATAO-4, ATAO2 | AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4); aldehyde oxidase/ aryl-aldehyde oxidase (1339 aa)
         
  0.872
Bra011570
AT4G34890 (E=0.0) ATXDH1, XDH1 | XDH1 (XANTHINE DEHYDROGENASE 1); xanthine dehydrogenase (1357 aa)
         
  0.872
Bra002347
AT5G20960 (E=0.0) AAO1, AO1, ATAO, ATAO1 | AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1); aldehyde oxidase/ indole-3-acetaldehyde oxidase (1364 aa)
         
  0.872
Bra030681
AT1G07420 (E=2e-155) ATSMO2, SMO2-1 | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (517 aa)
     
  0.750
Bra027585
AT1G31800 (E=2e-044) CYP97A3, LUT5 | CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding (461 aa)
         
  0.726
Bra035078
AT1G78940 (E=2e-266) | protein kinase family protein (1230 aa)
   
  0.716
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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