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Bra004523 protein (Brassica rapa) - STRING interaction network
"Bra004523" - AT2G46610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004523AT2G46610 (E=5e-094) | arginine/serine-rich splicing factor, putative (246 aa)    
Predicted Functional Partners:
Bra039394
AT3G13570 (E=1e-069) SCL30A | SCL30a; RNA binding / nucleic acid binding / nucleotide binding (263 aa)
       
 
  0.999
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.991
Bra024624
AT1G23860 (E=6e-045) SRZ-21, SRZ21 | RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding (215 aa)
     
  0.978
Bra032082
AT2G24590 (E=1e-045) | splicing factor, putative (203 aa)
     
  0.974
Bra023994
AT4G31580 (E=2e-040) SRZ-22, SRZ22, RSZP22 | SRZ-22; protein binding (199 aa)
     
  0.974
Bra007840
AT2G24650 (E=5e-086) | DNA binding / transcription factor (856 aa)
     
  0.974
Bra005756
AT2G37340 (E=4e-024) RSZ33 | RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding (230 aa)
     
  0.974
Bra028159
AT4G35500 (E=1e-181) | protein kinase family protein (368 aa)
     
  0.974
Bra020218
AT5G22840 (E=9e-122) | protein kinase family protein (525 aa)
     
  0.974
Bra019629
AT3G53030 (E=1e-027) SRPK4 | SRPK4 (Ser/Arg-rich protein kinase 4); kinase/ protein kinase (84 aa)
     
  0.974
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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