STRINGSTRING
Bra004528 protein (Brassica rapa) - STRING interaction network
"Bra004528" - AT2G46540 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004528AT2G46540 (E=1e-024) | unknown protein (57 aa)    
Predicted Functional Partners:
Bra016083
AT1G72170 (E=2e-028) | unknown protein (93 aa)
     
   
  0.596
Bra003890
AT1G72170 (E=4e-035) | unknown protein (95 aa)
     
   
  0.596
Bra025407
AT3G29970 (E=2e-043) | germination protein-related (87 aa)
           
  0.591
Bra005964
AT5G08050 (E=1e-042) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF1118 (InterPro-IPR009500), Uncharacterised conserved protein UCP022207 (InterPro-IPR016801); Has 41 Blast hits to 41 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (157 aa)
           
  0.514
Bra016088
AT1G72040 (E=3e-239) | deoxynucleoside kinase family (561 aa)
           
  0.513
Bra008003
AT1G72040 (E=8e-219) | deoxynucleoside kinase family (565 aa)
           
  0.513
Bra004023
AT1G68680 (E=6e-027) | unknown protein (91 aa)
     
   
  0.505
Bra031026
AT3G10110 (E=1e-068) MEE67 | MEE67 (maternal effect embryo arrest 67); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (168 aa)
     
   
  0.447
Bra016560
AT3G10110 (E=2e-065) MEE67 | MEE67 (maternal effect embryo arrest 67); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (169 aa)
     
   
  0.447
Bra016376
AT1G22520 (E=2e-030) | unknown protein (146 aa)
     
   
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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